Commands
source("http://www.bioconductor.org/biocLite.R")
biocLite("edgeR")
# use this tutorial https://cgrlucb.wikispaces.com/file/view/edgeR_Tutorial.pdf
References
Tutorials
http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool/Day3/rnaSeq_DE.pdf https://www.bioconductor.org/packages/devel/bioc/vignettes/edgeR/inst/doc/edgeRUsersGuide.pdf https://cgrlucb.wikispaces.com/file/view/edgeR_Tutorial.pdf
Papers
Robinson MD, McCarthy DJ and Smyth GK (2010). “edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.” Bioinformatics, 26, pp. -1.
McCarthy, J. D, Chen, Yunshun, Smyth and K. G (2012). “Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.” Nucleic Acids Research, 40(10), pp. -9.