Tutorials

T. Girke’s website at UC Riverside

http://manuals.bioinformatics.ucr.edu/home/R_BioCondManual

Excellent slides from T. Girke

http://faculty.ucr.edu/~tgirke/HTML_Presentations/Manuals/Workshop_Dec_12_16_2013/Rrnaseq/Rrnaseq.pdf

Bioconductor tutorial from bioconductor site

https://www.bioconductor.org/help/course-materials/2012/useR2012/Bioconductor-tutorial.pdf

Excellent tutorial on RNAseq

http://www.nathalievilla.org/doc/pdf/tutorial-rnaseq.pdf

DESeq manual

http://bioconductor.org/packages/devel/bioc/vignettes/DESeq/inst/doc/DESeq.pdf

Biostring tutorial

https://web.stanford.edu/class/bios221/labs/biostrings/lab_1_biostrings.html

Biostrings manual

http://www.bioinformatics-sannio.org/wordpress/wp-content/uploads/2015/06/R-programming-3.1-sequence-analysis-with-Biostrings.pdf

Shortread manual

http://bioconductor.org/packages/release/bioc/html/ShortRead.html

Cheatsheets

https://www.rstudio.com/wp-content/uploads/2016/10/r-cheat-sheet-3.pdf

http://moo.nac.uci.edu/~hjm/AnRCheatsheet.html