Commands

# KMC
kmc -m1 /share/data/D-ecoli-10K-ilmn/z1.fastq out1 tmp
kmc -m1 /share/data/D-ecoli-10K-ilmn/z2.fastq out2 tmp
kmc_dump merge merge-kmers.txt

# KMC tools
kmc_tools simple out1 out2 intersect out_ins
kmc_tools simple out1 out2 union merge
kmc_tools transform out_ins histogram hist.txt

References

Manual

http://sun.aei.polsl.pl/REFRESH/index.php?page=projects&project=kmc&subpage=about

https://github.com/refresh-bio/KMC/blob/master/kmc_tools.pdf

Github

https://github.com/refresh-bio/KMC

Papers

https://arxiv.org/abs/1407.1507 http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-14-160