Commands

# Building database
kraken-build --standard --db [DBNAME]

# Search for seqs.fa
kraken --db [DBNAME] seqs.fa

References

Manual

https://ccb.jhu.edu/software/kraken/ https://ccb.jhu.edu/software/kraken/MANUAL.html

Paper

https://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-3-r46

Github

https://github.com/DerrickWood/kraken