Commands
use this tutorial
http://1ofdmq2n8tc36m6i46scovo2e.wpengine.netdna-cdn.com/wp-content/uploads/2014/12/Manual.pdf
References
Manual
http://1ofdmq2n8tc36m6i46scovo2e.wpengine.netdna-cdn.com/wp-content/uploads/2014/12/Manual.pdf
Papers
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0023501 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4373400/ http://gauss.cs.ucsb.edu/~aydin/sc15_genome.pdf