Commands
# Overlap
minimap -Sw5 -L100 -m0 -t8 reads.fq reads.fq | gzip -1 > reads.paf.gz
# Layout
miniasm -f reads.fq reads.paf.gz > reads.gfa
# Overlap
minimap -Sw5 -L100 -m0 -t8 reads.fq reads.fq | gzip -1 > reads.paf.gz
# Layout
miniasm -f reads.fq reads.paf.gz > reads.gfa
Cheatsheets is a collection of bioinformatics cheat sheets we've written. Email coding4medicine with suggestions and changes. Theme credit - rstacruz.