SOAPdenovo-trans

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Transcription Assembly Commands

# To do entire assembly in one step -
SOAPdenovo-Trans all -s config_file -o outputGraph

# To run the assembly process in steps -
SOAPdenovo-Trans pregraph -s config_file -K 31 -o outputGraph 
SOAPdenovo-Trans contig -g outputGraph
SOAPdenovo-Trans map -s config_file -g outputGraph
SOAPdenovo-Trans scaff -g outputGraph

References

Manual

http://soap.genomics.org.cn/SOAPdenovo-Trans.html

Paper

https://academic.oup.com/bioinformatics/article/30/12/1660/380938

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